ó Jë?Tc@swddlTddlTddlTddlmZmZmZddlZddlm Z ej j ƒZ ej j ƒZ e je e ddƒZeje e geƒZddedd ed „Zd deed„Zdd„Zdd„ZedkrseƒGHeƒZdGHdZeeedddƒƒ\ZZeeeƒZeeƒZ ee ƒZ!dGeƒeGdGHndS(iÿÿÿÿ(t*(t convolve2dt correlate2dt fftconvolveN(tconvt border_modetfulltdb2iii(tenergyc CsêdGHt|d|d|ƒ}dG|jGHdGHt|t|ddd…ƒƒ} t|dƒtkrŸt|dtjdƒ} t|d tjdƒ} n|d} |d } |d krí| | | …dd…f} | jdƒ} n|d krE| | | …dd…f} | jdƒ} t| ƒ} t d| fƒ} n|d kr¬| | | …dd…f} | jdƒ} t| ƒ} t| ƒ} t dd| fƒ} n|t kràt | t |ƒt |ƒd dƒ} n|| fS(s›Computes a DWT (Discrete Wavelet Transform) and a detector based on a convolution with a given pattern @signal: numerized audio signal @pattern: previously made pattern of whale vocalization @wavelet: PyWavelets wavelet type @level: level of decomposition. Level=6 gives 2 ^ 6 = 64 rows @normalized: normalization of the scalogram @freq_range: frequency range where we look for information @detector_type: energy, diff(energy) or diff(diff(energy)) @smooth: smoothing of the detector with a moving average ie convolution with ones(x) returns: an array detector made accordingly to the specified rulessComputing scalogram ...twavelettlevelsscalogram shape:sComputing correlation ...NiÿÿÿÿiiRtd_energyt d2_energytmodetsame(t scalogramtshapeRtfliplrttypetinttvaluestsumtdiffthstacktFalsetconvolvetonestfloat( tsignaltpatternR R t normalizedt freq_ranget detector_typetsmoothtscalot correlatedth_freqtl_freqtdetector((sG/net/nas-lsis-3/SABIOD/METHODES/NICOLAS/NORTEK/CODE/vocal_detector_1.pyR&s6 "         (tmeangà?cCs®|s‰|dkrF|r/d||jƒ}q†d||jƒ}q‰|dkr‰|rod|t|ƒ}q†d|t|ƒ}q‰n|rž||k}n ||k}|S(sûTransforms a detector array into a boolean array, with 1 where there is a detection and 0 otherwise @scalo: scalogram @detector: detector previously computed on the scalogram @threshold_type: mean or average @threshold_coeff: if threshold_coeff == 0.3, values 30% above the signal.mean() will trigger a detection @external: absolute threshold, if previously computed on a broader time window @above: > or < threshold returns: a booleanized detectorR'itmedian(R'R((R"R&tthreshold_typetthreshold_coefftexternaltabovet thresholdt booleanized((sG/net/nas-lsis-3/SABIOD/METHODES/NICOLAS/NORTEK/CODE/vocal_detector_1.pyR.Ps    gš™™™™™É?cCs5t|ƒtt|ƒƒ|kr+t}nt}|S(sâReturns the decision based on the per sample detection @booleanized: booleanized detector @threshold: % of detection above which we decide the window is actually positive returns: a decision (boolean)(RRtlentTrueR(R.R-tdecision((sG/net/nas-lsis-3/SABIOD/METHODES/NICOLAS/NORTEK/CODE/vocal_detector_1.pyR1os" gš™™™™™¹?cCsOt|ƒ}t|ƒtt|ƒt|dAƒƒ|krEt}nt}|S(sReturns the decision based on decisions made on several windows of signal @decisions: decisions made upon several windows of signal @threshold: % of positive decisions above which we decide the group is positive as a whole returns: a decision (boolean)i(tarrayRRR0R(t decisionsR-R1((sG/net/nas-lsis-3/SABIOD/METHODES/NICOLAS/NORTEK/CODE/vocal_detector_1.pyt agregated~s  0 t__main__s Testing ...sO/NAS3/SABIOD/SITE/NORTEKMED/SAMPLE_SOUNDS/BOTTLENOSE/04._Bottlenose_dolphin.waviidi2sDone in s3seconds (the count can be wrong if on utln servers)(ii((i2id("tpylabttimetdwt_1t scipy.signalRRRttheanottheano.tensor.nnetRttensorttensor4timagetfiltertconv2dtresulttfunctiont theano_conv2dRR&R0R.R1R4t__name__tasctimettict soundfiletrandinttscaltdetectbtdta(((sG/net/nas-lsis-3/SABIOD/METHODES/NICOLAS/NORTEK/CODE/vocal_detector_1.pyts.    ?    !