a
    Df                     @   s   d dl Z d dlZd dlZd dlmZ d dlmZ d dlm	Z	 d dl
mZ d dlZd dlmZmZmZmZmZmZ eejjZdd Zdd
dZdd ZdddZdS )    N)
coo_matrix)connected_components)combinations)rejection_sample	make_heapdeheap_sortsimple_heap_pushhas_been_visitedmark_visitedc                    s  t jt j | j| jj| jj| jtj	ddtj
jd d d tj
jtj
jtj
jd d d tj
jd d d tj
jtj
jtj
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jd d d tj
jd d d tj
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jd d d d df tj
jtj
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jdd fdd}|S )NT   )current_queryijheap_prioritiesheap_indices	candidatevertexdd_vertexvisitedindicesindptrdataZ	heap_sizedistance_scaledistance_boundZ
seed_scale)ZfastmathZnogillocalsc                    s  t | jd |}d| }t| jd D ]}d|d d < ksH krxt| | d  }|dkr&| | | }	qq&n| | }	|d | }
|d | }dd tdD }|jd }t|D ]H}t|| }| |	}t|
||| t	|||f t
|| q||
d  }t|\}}||k r&t| |d  D ]j}| }t||dkr>t
|| | |	}||k r>t|
||| t	|||f ||
d  }q>t|dkrq&nt|\}}q q&|S )Nr   g      ?           r   c                 S   s"   g | ]}t t jt d fqS ))npfloat32infint32).0r    r$   d/nfs/NAS7/SABIOD/METHODE/ermites/ermites_venv/lib/python3.9/site-packages/pynndescent/graph_utils.py
<listcomp>I       zJcreate_component_search.<locals>.custom_search_closure.<locals>.<listcomp>)r   shaperanger   sqrtsumr"   r   heapqheappushr
   heappopr	   len)query_pointscandidate_indiceskepsilonr   resultr   r   Znormr   r   r   Zseed_setZn_initial_pointsr   r   r   r   r   r   alternative_cosinealternative_dotr   distr   r   r$   r%   custom_search_closure!   sL    


z6create_component_search.<locals>.custom_search_closure)
pynnd_distr7   r6   	_raw_dataZ_search_graphr   r   Z_distance_funcnumbaZnjittypesr    Zuint32r"   Zuint8int16)indexr9   r$   r5   r%   create_component_search   s<    ?r@   
   r   c                 C   s  dd t dD }| tt|| jd | |d< |tt||jd | |d< d}	|||	  }
|d|	   }ddg}tj}|d d |d d f}|d s|d r||
||||\}}}t||\}}t |jd D ]L}t |jd D ]8}|||f |k r|||f }||	 | |||f f}qq||	 }t|d d df }|d|	  jd |jd krt	|d|	  |k|d|	 < ||d|	 < ||d|	   }
d|	 }	q|d |d |fS )Nc                 S   s   g | ]}t jd t jdqS )r   Zdtype)r   zerosint64)r#   r   r$   r$   r%   r&      r'   z2find_component_connection_edge.<locals>.<listcomp>r   r   r   T)
r)   r   r   rD   r(   copyr!   r   uniqueany)
component1
component2search_closureraw_datar   	rng_statesearch_sizer3   r   Z
query_sider0   r1   changedZ	best_distZ	best_edgeZindsdists_r   r   Znew_indicesr$   r$   r%   find_component_connection_edge{   s>    



rQ   c                 C   s   t | jd | jd ftjd}t||dk< ttj| jd tjd| jd |_| 	 |_
|	 |_| }d|j|jdk< |  ||j}|S )Nr   rB   r   r   r   )r   r(   r   r    FLOAT32_EPSrepeatZaranger"   rowZravelcolr   tocsrr   Zeliminate_zerosmaximumT)Zneighbor_indicesZneighbor_distancesr4   r$   r$   r%   adjacency_matrix_representation   s    

rY   c           
         s   t t| \} |  } j   fddtj|ddfddtt|dD }|D ]"\}}}	|	|||f< |	|||f< qf| S )Nc              	      sx   t  | kd }t  |kd }t||jjjd\}}}jd urZ|}j| }j| }|||fS )Nr   )rM   )r   whererQ   r;   Z_visitedrL   Z_distance_correction_vertex_order)c1c2rH   rI   r   r   r   )component_idsr?   rJ   rM   r$   r%   new_edge   s     



zconnect_graph.<locals>.new_edgethreads)n_jobsZpreferc                 3   s"   | ]\}}t  ||V  qd S )N)joblibZdelayed)r#   r\   r]   )r_   r$   r%   	<genexpr>   s   z connect_graph.<locals>.<genexpr>r   )	r@   r   Ztolilr[   rb   ZParallelr   r)   rV   )
graphr?   rM   ra   Zn_componentsr4   Z	new_edgesr   r   r   r$   )r^   r?   r_   rJ   rM   r%   connect_graph   s    
re   )rA   r   )rA   N)r<   numpyr   r,   Zscipy.sparser   Zscipy.sparse.csgraphr   	itertoolsr   Zpynndescent.distancesZ	distancesr:   rb   Zpynndescent.utilsr   r   r   r   r	   r
   Zfinfor    ZepsrR   r@   rQ   rY   re   r$   r$   r$   r%   <module>   s    	j  
-